REPLICATION RUN STARTED AT: Fri Jul 18 11:04:05 CEST 2025
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SYSTEM INFORMATION:
OS: Darwin Shreyass-MacBook-Pro.local 24.5.0 Darwin Kernel Version 24.5.0: Tue Apr 22 19:54:25 PDT 2025; root:xnu-11417.121.6~2/RELEASE_ARM64_T6020 arm64
Python Version: Python 3.12.4
R Version: R version 4.4.1 (2024-06-14) -- "Race for Your Life"
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Checking/installing Python dependencies from requirements.txt...
Requirement already satisfied: annotated-types==0.7.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 1)) (0.7.0)
Requirement already satisfied: anyio==4.9.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 2)) (4.9.0)
Requirement already satisfied: certifi==2025.7.14 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 3)) (2025.7.14)
Requirement already satisfied: charset-normalizer==3.4.2 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 4)) (3.4.2)
Requirement already satisfied: et_xmlfile==2.0.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 5)) (2.0.0)
Requirement already satisfied: filelock==3.18.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 6)) (3.18.0)
Requirement already satisfied: fsspec==2025.7.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 7)) (2025.7.0)
Requirement already satisfied: h11==0.16.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 8)) (0.16.0)
Requirement already satisfied: hf-xet==1.1.5 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 9)) (1.1.5)
Requirement already satisfied: httpcore==1.0.9 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 10)) (1.0.9)
Requirement already satisfied: httpx==0.28.1 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 11)) (0.28.1)
Requirement already satisfied: huggingface-hub==0.33.4 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 12)) (0.33.4)
Requirement already satisfied: idna==3.10 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 13)) (3.10)
Requirement already satisfied: Jinja2==3.1.6 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 14)) (3.1.6)
Requirement already satisfied: joblib==1.5.1 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 15)) (1.5.1)
Requirement already satisfied: MarkupSafe==3.0.2 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 16)) (3.0.2)
Requirement already satisfied: mpmath==1.3.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 17)) (1.3.0)
Requirement already satisfied: networkx==3.5 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 18)) (3.5)
Requirement already satisfied: numpy==1.26.4 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 19)) (1.26.4)
Requirement already satisfied: ollama==0.5.1 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 20)) (0.5.1)
Requirement already satisfied: openpyxl==3.1.5 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 21)) (3.1.5)
Requirement already satisfied: packaging==25.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 22)) (25.0)
Requirement already satisfied: pandas==2.3.1 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 23)) (2.3.1)
Requirement already satisfied: pillow==11.3.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 24)) (11.3.0)
Requirement already satisfied: pydantic==2.11.7 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 25)) (2.11.7)
Requirement already satisfied: pydantic_core==2.33.2 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 26)) (2.33.2)
Requirement already satisfied: python-dateutil==2.9.0.post0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 27)) (2.9.0.post0)
Requirement already satisfied: pytz==2025.2 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 28)) (2025.2)
Requirement already satisfied: PyYAML==6.0.2 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 29)) (6.0.2)
Requirement already satisfied: regex==2024.11.6 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 30)) (2024.11.6)
Requirement already satisfied: requests==2.32.4 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 31)) (2.32.4)
Requirement already satisfied: safetensors==0.5.3 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 32)) (0.5.3)
Requirement already satisfied: scikit-learn==1.7.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 33)) (1.7.0)
Requirement already satisfied: scipy==1.16.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 34)) (1.16.0)
Requirement already satisfied: seqeval==1.2.2 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 35)) (1.2.2)
Requirement already satisfied: setuptools==80.9.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 36)) (80.9.0)
Requirement already satisfied: six==1.17.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 37)) (1.17.0)
Requirement already satisfied: sniffio==1.3.1 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 38)) (1.3.1)
Requirement already satisfied: sympy==1.14.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 39)) (1.14.0)
Requirement already satisfied: threadpoolctl==3.6.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 40)) (3.6.0)
Requirement already satisfied: tokenizers==0.21.2 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 41)) (0.21.2)
Requirement already satisfied: torch==2.2.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 42)) (2.2.0)
Requirement already satisfied: torchvision==0.17.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 43)) (0.17.0)
Requirement already satisfied: tqdm==4.67.1 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 44)) (4.67.1)
Requirement already satisfied: transformers==4.53.2 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 45)) (4.53.2)
Requirement already satisfied: typing-inspection==0.4.1 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 46)) (0.4.1)
Requirement already satisfied: typing_extensions==4.14.1 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 47)) (4.14.1)
Requirement already satisfied: tzdata==2025.2 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 48)) (2025.2)
Requirement already satisfied: urllib3==2.5.0 in /opt/miniconda3/lib/python3.12/site-packages (from -r requirements.txt (line 49)) (2.5.0)
Checking/installing R package dependencies...
R packages are up to date.
Creating output directories...
[MODE] Starting FULL data recreation. This will be slow.
--- Checking for required Ollama models ---
Checking for model: gemma2:9b
Checking for model: llama3.1:latest
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ERROR: Required Ollama model 'llama3.1:latest' is not available.
Please pull the model by running the following command:

    ollama pull llama3.1:latest

Then, re-run this script: bash run.sh full
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